XIX Symposium of the Polish Bioinformatics Society — List of posters
Posters:
1. Artemi Aleshkevich - NATSEQ: A Nextflow pipeline for identification of natural antisense transcripts from long-read RNA-seq data
2. Jan Badura - Statistics for non-canonical interactions
3. Abdeldjalil Bouziane - Functional clustering of low-complexity regions across RNA-binding proteins
4. Julia Cieszko - Identification of potentially amyloidogenic peptides in gut microbiota bacterial proteins using the updated AmyLoad database
5. Dariusz Dziel - G4Composer: A Web-Based Framework for Rapid Assembly of Complex G-Quadruplex Architectures
6. Alicja Dzik - Benchmarking deep learning models for lncRNA subcellular localization prediction
7. Krystyna Grzesiak - Iscores: proper scoring rules for evaluating missing-value imputation methods
8. Valentín Iglesias - THE AMYLOGRAPH AMYLOID-ANTIBODY DATABASE: DATA ACQUISITION, CURATION, EXTRACTION FOR AMYLOID-ANTIBODY INTERACTIONS
9. Katarzyna Jurkowska - SCSM: Prior-Informed Genetic Demultiplexing for Multiplexed Single-Cell Sequencing of Clinical Cohorts
10. Mikołaj Kikolski - Development of confomational ensemble embedding method for flexible target diffusion based generative models
11. Krystian Komenda - Somatic piRNA expression and their putative regulatory roles in two insect models
12. Nitheeskumar Kumar - Investigating the Impact of Protonation-State on the Conformational Dynamics of the Glucose Facilitated Transporter (GLF)
13. Julia A. Manikowska - Interface Usability Barriers for Older Adults and Their Implications for Health-Related Applications
14. Sylwia Morawiec - LCR-Dataset: A Benchmark for Language Models to Analyze Functions of Low-Complexity Regions in Scientific Literature
15. Abraham Muñiz-Chicharro - Computational analysis of sugar–Glf interactions to improve sugar transport efficiency
16. Kamil Patan - A Comparative Genomic Framework for Identifying Candidate Functional Sites in the European Bison Genome
17. Sofiya Aniskevich - FROM HEALTH TO ADENOMA TO COLORECTAL CANCER: EXPLORING GUT MICROBIOME SIGNATURES
18. Kacper Roszczak - Automated and autonomous experimental setup (AAES) for long-term and multi-site behavioural experiments
19. Antoni Sawa - Identification of double-stranded RNA molecules formed by 5’-overlapping protein-coding gene transcripts
20. Valentyn Bezshapkin - Democratising structure-based protein function prediction with metagenomic-deepFRI
21. Maksim Serdakov - LaRNAl: a web platform for RNA structure analysis
22. Mariia Rutkowska - TickPacket
23. Piotr Suszyński - Explainable Artificial Intelligence methods for DeepVariant
24. Alicja Wojciechowska - Secretome: finding and characterizing secreted proteins in the human gut microbiome
25. Klaudia Skutnik - Beyond Binary ORA: Preliminary Results of Unsupervised Clustering on LLM Embeddings for Omics Data
26. Zuzanna Kałużna - Modeling the JAK/STAT Signaling Pathway in Uveal Melanoma Metastasis Using Petri Nets
27. Marcin Kuźniar - Adapting Deep Learning to Site-Specific IHC Variations with Limited Annotations
28. Radoslaw Plawecki - Allergies gone viral – a machine learning analysis of the phageome in allergies
29. Sara Pini - From gene scoring to trio analysis: a new application framework for the GORDIAN score
30. Karolina Widzisz - Probing the Embedding Space: A Multi-Model Semantic Analysis of KEGG Pathways
31. Sosina Sewunet - Deep Generative Learning for De Novo Antifungal Peptide Design
Talk + posters:
1. Dariusz Brzezinski - Recognizing Ligands in CryoEM using Deep Learning
2. Juan Francisco Carrascoza Mayen - Enhanced Sampling of Free-Energy Surfaces in Biomolecular Systems: Conformational and Reactive Pathways
3. Julia Rochatka - Investigating the Impact of Sex-Specific Reference Genomes on RNA-Seq Read Mapping
4. Teresa Szczepińska - Predicting Genomic Determinants of Chromatin Compaction Using Machine Learning
